Precision Health improving the understanding of underlying mechanisms through the analysis of temporal and multi-modal data 

April 22-23, 2024, Simula Research Lab, Kristian Augusts gate 23, Oslo, Norway

Data sets from diverse sources are collected in multi-omics studies with the goal of bringing together various aspects of genomics, phenomics and environment in the quest for precision medicine. Such data sets are heterogeneous – they are often a collection of static and dynamic data sets with different characteristics such as different data/noise distributions, different temporal resolutions.  For instance, some data sets are dynamic as a result of repeated sampling every few months in longitudinal cohorts, every few hours in meal challenge tests, every few seconds through wearable sensors or simply as a result of the temporal nature of electronic health records.

Integrating such heterogeneous data sets in an explainable way is one of the main pillars of precision medicine in order to find better stratifications of disease groups, reveal biomarkers, understand individual differences, predict early signs of diseases, and design precision therapy.

However, integration – in other words, jointly analyzing data from multiple sources (also referred to as data fusion) - is challenging due to the different nature of these data sets. Dynamic data sets can often be arranged as a multiway array, e.g., participants by metabolites by time tensor, while static data sets can be in the form of matrices, e.g., participants by genes. Tensor factorizations, which are extensions of matrix factorizations (e.g., principal component analysis) to multiway data sets, have been successfully used to reveal the underlying patterns in such higher-order/multiway data sets. For instance, tensor factorizations have been used to analyze gut microbiome data collected from infants over time and capture birth mode-related microbial changes, have shown promising performance in terms of revealing temporal phenotypes from electronic health records as well as capturing metabolic differences among participants in terms of their response to a meal challenge test. Tensor factorizations have been extended to joint analysis of data sets from multiple sources through coupled matrix and tensor factorizations, and such coupled factorization-based approaches have also started to be used in systems biology applications.

In this workshop, we will bring together a selection of studies (where integration of such heterogeneous data is of interest) and the researchers working on developing methods based on tensor factorizations and their extensions to joint analysis of data from multiple sources with a particular interest in omics data analysis.  We expect the workshop to facilitate the synergy between different disciplines and pave the way to effective methods to address data analysis challenges, especially in terms of integration of data sets, in precision health.

Organizers

Evrim Acar, Simula Metropolitan Center for Digital Engineering

Age K. Smilde, University of Amsterdam

Morten A. Rasmussen, COPSAC & University of Copenhagen

Confirmed Speakers & Participants

Speakers

Attendees

  • David Barnett, Maastricht University, The Netherlands

  • Ingunn Berget, Nofima, Norway

  • Christos Chatzis, SimulaMet, Norway

  • Balazs Erdos, SimulaMet, Norway

  • Jon Alm Eriksen, Bio-Me, Norway

  • Mikkel Lepperød, Simula Research Laboratory, Norway

  • Ingrid Måge, Nofima, Norway

  • Naimahmed Nesaragi, Oslo University Hospital

  • Biswa Sahu, University of Oslo

  • Viktor Skantze, Fraunhofer-Chalmers Centre, Sweden

  • Magne Thoresen, University of Oslo

  • Manuela Zucknick, University of Oslo

  • Rasmus Bro, University of Copenhagen

  • Charlotte Castel, Oslo Centre for Biostatistics and Epidemiology

  • Matteo D'Alessandro, Oslo Centre for Biostatistics and Epidemiology

  • Parvaneh Ebrahimi, University of Copenhagen & COPSAC

  • Mari Myhrstad, Oslo Metropolitan University

  • Marco Molinari, University of Oslo

  • Marie E. Rognes, Simula Research Laboratory, Norway

  • Carla Schenker, SimulaMet, Norway

  • Age Smilde, University of Amsterdam & SimulaMet

  • Charles Stabell, Bio-Me, Norway

  • Serdar Özsezen, TNO, The Netherlands

  • Zhi Ye, University of Copenhagen

Workshop Schedule

The workshop will take place in HPL’s Lecture Hall on 8th Floor, Kristian Augusts gate 23, Oslo.